python class    | xml class                      | description
AbstractText    | AceAssembly                    | file in ace format (cap3)
AbstractText    | AncestorsFile                  | file to specify ancestors state in phylip (mix)
AbstractText    | BambeTree                      | 
AbstractText    | BananaOutput                   | 
AbstractText    | Blast2taxonomyHtmlOutput       | 
AbstractText    | BlastHtmlOutput                | 
AbstractText    | BlastTextOutput                | 
AbstractText    | BlastXmlOutput                 | 
AbstractText    | BoxshadeHtmlOutput             | 
AbstractText    | BoxshadeRtfOutput              | 
AbstractText    | BoxshadeXfigOutput             | 
AbstractText    | BtwistedOutput                 | 
AbstractText    | CaiOutput                      | 
AbstractText    | ChargeOutput                   | 
AbstractText    | ChecktransOutput               | 
AbstractText    | ChipsOutput                    | 
AbstractText    | ClippingParametersFile         | 
AbstractText    | CodcmpOutput                   | 
AbstractText    | CoderetOutput                  | 
AbstractText    | CodonWAnalysisFile             | 
AbstractText    | CofoldSequence                 | 
AbstractText    | ComAlignAlignment              | 
AbstractText    | CompseqOutput                  | 
AbstractText    | ConsensusAlphabet              | 
AbstractText    | CostsFile                      | 
AbstractText    | CpgplotOutput                  | 
AbstractText    | CpgreportOutput                | 
AbstractText    | CuspOutput                     | 
AbstractText    | DCAlignment                    | 
AbstractText    | DsspOutput                     | 
AbstractText    | ELPOutput                      | 
AbstractText    | EmbossDistanceMatrix           | 
AbstractText    | EmowseOutput                   | 
AbstractText    | EnergyParameterFile            | 
AbstractText    | EntryFullText                  | 
AbstractText    | EnzymeData                     | 
AbstractText    | EpestfindOutput                | 
AbstractText    | EpsilonFile                    | 
AbstractText    | Est2genomeOutput               | 
AbstractText    | FastaHtmlOutput                | 
AbstractText    | FastaTextOutput                | 
AbstractText    | Feature                        | 
AbstractText    | FindkmOutput                   | 
AbstractText    | ForceAlignFile                 | 
AbstractText    | FreakOutput                    | 
AbstractText    | GeeceeOutput                   | 
AbstractText    | GffCustomFile                  | 
AbstractText    | GruppiOutput                   | 
AbstractText    | HmmDirichletPrior              | 
AbstractText    | HmmNullModelFile               | 
AbstractText    | HmmPAM                         | 
AbstractText    | HmmTextProfile                 | 
AbstractText    | HmomentOutput                  | 
AbstractText    | IepOutput                      | 
AbstractText    | InfoalignOutput                | 
AbstractText    | InvertedOutput                 | 
AbstractText    | IsochoreOutput                 | 
AbstractText    | LindnaMappingCommands          | 
AbstractText    | MFoldFoldingConstraints        | 
AbstractText    | MegamergerOutput               | 
AbstractText    | MfoldDetailHtmlOutput          | 
AbstractText    | MfoldHtmlOutput                | 
AbstractText    | MfoldRnamlOutput               | 
AbstractText    | MixtureFile                    | 
AbstractText    | Molwt                          | 
AbstractText    | MrepsXmlOutput                 | 
AbstractText    | MuscleAlignment                | 
AbstractText    | MuscleHtmlOutput               | 
AbstractText    | NewcpgreportOutput             | 
AbstractText    | NewcpgseekOutput               | 
AbstractText    | OddcompOutput                  | 
AbstractText    | PalindromeOutput               | 
AbstractText    | Pattern                        | 
AbstractText    | Pdb                            | 
AbstractText    | PepcoilOutput                  | 
AbstractText    | PepinfoOutput                  | 
AbstractText    | PepstatsOutput                 | 
AbstractText    | PeptideMolweights              | 
AbstractText    | PhylipCategoriesRates          | 
AbstractText    | PhylipDiscreteCharMatrix       | 
AbstractText    | PhylipDistanceMatrix           | 
AbstractText    | PhylipWeight                   | 
AbstractText    | PrettyseqOutput                | 
AbstractText    | Primer3Mishybridizing          | 
AbstractText    | Primer3Mispriming              | 
AbstractText    | Primer3Output                  | 
AbstractText    | PrimerPairs                    | 
AbstractText    | PrimoOligo                     | 
AbstractText    | PrimoRegion                    | 
AbstractText    | PrimoRepeats                   | 
AbstractText    | ProfileOrMatrix                | 
AbstractText    | ProfitOutput                   | 
AbstractText    | ProphecyOutput                 | 
AbstractText    | ProsePattern                   | 
AbstractText    | PrositePattern                 | 
AbstractText    | PrositeProfile                 | 
AbstractText    | ProteinCodes                   | 
AbstractText    | PsortHtmlOutput                | 
AbstractText    | QuicktandemOutput              | 
AbstractText    | RNAStructure                   | 
AbstractText    | RedataOutput                   | 
AbstractText    | RemapOutput                    | 
AbstractText    | RestoverOutput                 | 
AbstractText    | RestrictionFile                | 
AbstractText    | RnaFoldSequence                | 
AbstractText    | RnadistanceAlignment           | 
AbstractText    | ScanPattern                    | 
AbstractText    | SequenceOverlap                | 
AbstractText    | ShowalignOutput                | 
AbstractText    | ShowfeatOutput                 | 
AbstractText    | ShoworfOutput                  | 
AbstractText    | ShowseqOutput                  | 
AbstractText    | SigPattern                     | 
AbstractText    | SixpackOutput                  | 
AbstractText    | StrideOutputFile               | 
AbstractText    | StssearchOutput                | 
AbstractText    | SupermatcherError              | 
AbstractText    | SycoOutput                     | 
AbstractText    | SymbolFile                     | 
AbstractText    | TRnaScanFirstPassResult        | 
AbstractText    | TacgHtmlOutput                 | 
AbstractText    | TacgTextOutput                 | 
AbstractText    | TandemOutput                   | 
AbstractText    | TaxonomyOutput                 | 
AbstractText    | TextsearchOutput               | 
AbstractText    | TfscanOutput                   | 
AbstractText    | TipdateAlignment               | 
AbstractText    | ToppredHtmlOutput              | 
AbstractText    | USA_list                       | 
AbstractText    | Vector                         | 
AbstractText    | VectorstripOutput              | 
AbstractText    | WobbleOutput                   | 
AbstractText    | WordcountOutput                | 
AbstractText    | WordfinderError                | 
AbstractText    | XpoundOutput                   | 
AbstractText    | XreportOutput                  | 
Binary          | AbiTraceFile                   | 
Binary          | HmmBinProfile                  | 
Binary          | PDF                            | 
Binary          | Picture                        | 
Binary          | PostScript                     | 
Text            | 3DStructure                    | 
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